ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2waqB5 - ECOD Domain | ECOD

ECOD/Domains/e2waqB5

e2waqB5

UID: 001669343

PDB

Range: B:753-875
PDB: 2WAQ chain B(all domains)
UniProt: B8YB55 (all domains)
Gene: rpo2

Molecule: DNA-DIRECTED RNA POLYMERASE RPO2 SUBUNIT

3D Structure

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Related Domains

Browse other domains in RNA_pol_Rpb2_6 →

Classification

AArchitecturea+b complex topology(a.14)

XX-groupalpha/beta-Hammerhead/Barrel-sandwich hybrid(325)

HH-groupalpha/beta-Hammerhead/Barrel-sandwich hybrid(325.1)

TT-groupSingle hybrid motif(325.1.7)

FFamilyRNA_pol_Rpb2_6(325.1.7.2)

Ligands

in contact, ≤ 4 Å

Zinc ionZN
metalwithin 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00562RNA_pol_Rpb2_6

RNA polymerase Rpb2, domain 6

ClanCL0410LEF-8-like

External Links

ECOD PDB View: 2WAQ RCSB PDB: 2WAQ PDBe: 2WAQ UniProt: B8YB55

Downloads

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