ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2qqdC1 - ECOD Domain | ECOD

ECOD/Domains/e2qqdC1

e2qqdC1

UID: 000167287

PDB

Range: C:7-165
PDB: 2QQD chain C(all domains)
UniProt: Q57764 (all domains)
Gene: pdaD

Molecule: Pyruvoyl-dependent arginine decarboxylase (EC 4.1.1.19) (PvlArgDC)

3D Structure

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Related Domains

Browse other domains in PvlArgDC →

Classification

AArchitecturea+b four layers(a.13)

XX-groupPyruvoyl-dependent histidine and arginine decarboxylases(303)

HH-groupPyruvoyl-dependent histidine and arginine decarboxylases(303.1)

TT-groupPyruvoyl-dependent histidine and arginine decarboxylases(303.1.1)

FFamilyPvlArgDC(303.1.1.1)

Ligands

in contact, ≤ 4 Å

AgmatineAG2
drugDrugBank DB08838
Pyruvic acidPYR
drugDrugBank DB00119within 5 Å only

+ 1 additive ((4r)-2-Methylpentane-2,4-Diol)

Pfam Families

PF01862PvlArgDC

Pyruvoyl-dependent arginine decarboxylase (PvlArgDC)

External Links

ECOD PDB View: 2QQD RCSB PDB: 2QQD PDBe: 2QQD UniProt: Q57764

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

(4r)-2-Methylpentane-2,4-DiolMPD
DrugBank DB03564

Shown in the structure viewer. Drug annotations from DrugDomain.