ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e3ch0A1 - ECOD Domain | ECOD

ECOD/Domains/e3ch0A1

e3ch0A1

UID: 000167335

PDB

Range: A:0-271
PDB: 3CH0 chain A(all domains)
UniProt: Q11WD4 (all domains)

Molecule: Glycerophosphodiester phosphodiesterase

3D Structure

Loading viewer...

Related Domains

Browse other domains in GDPD →

Classification

AArchitecturea/b barrels(a.16)

XX-groupTIM beta/alpha-barrel(2002)

HH-groupTIM barrels(2002.1)

TT-groupTIM barrels(2002.1.1)

FFamilyGDPD(2002.1.1.106)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 3 additives (Citric acid, Glycerin, 1,2-ETHANEDIOL)

Citric acidCIT
DrugBank DB04272
GlycerinGOL
DrugBank DB09462
1,2-ETHANEDIOL

Pfam Families

Glycerophosphoryl diester phosphodiesterase family

ClanCL0036TIM_barrel

External Links

ECOD PDB View: 3CH0 RCSB PDB: 3CH0 PDBe: 3CH0 UniProt: Q11WD4

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Shown in the structure viewer. Drug annotations from DrugDomain.