ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5c2tD1 - ECOD Domain | ECOD

ECOD/Domains/e5c2tD1

e5c2tD1

UID: 001674761

PDB

Range: D:28-156
PDB: 5C2T chain D(all domains)
UniProt: P92507 (all domains)
Gene: SDHD1

Molecule: Succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial

3D Structure

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Related Domains

Browse other domains in CybS →

Classification

AArchitecturealpha bundles(a.7)

XX-groupTransmembrane heme-binding four-helical bundle(5069)

HH-groupTransmembrane heme-binding four-helical bundle(5069.1)

TT-groupFumarate reductase respiratory complex transmembrane subunits(5069.1.3)

FFamilyCybS(5069.1.3.4)

Ligands

in contact, ≤ 4 Å

L-Alpha-Phosphatidyl-Beta-Oleoyl-Gamma-Palmitoyl-PhosphatidylethanolamineEPH
drugDrugBank DB03047
FerrohemeHEM
drugDrugBank DB18267

Pfam Families

CybS, succinate dehydrogenase cytochrome B small subunit

ClanCL0335FumRed-TM

External Links

ECOD PDB View: 5C2T RCSB PDB: 5C2T PDBe: 5C2T UniProt: P92507

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

2-amino-5-[(2E)-3,7-dimethylocta-2,6-dien-1-yl]-3-methoxy-6-methylcyclohexa-2,5-diene-1,4-dione4YP

Shown in the structure viewer. Drug annotations from DrugDomain.