ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e5cqjA1 - ECOD Domain | ECOD

ECOD/Domains/e5cqjA1

e5cqjA1

UID: 001680456

PDB

Range: A:13-240
PDB: 5CQJ chain A(all domains)
UniProt: P60472 (all domains)
Gene: ispU

Molecule: Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific)

3D Structure

Loading viewer...

Related Domains

Browse other domains in Prenyltransf →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupUndecaprenyl diphosphate synthase(7534)

HH-groupUndecaprenyl diphosphate synthase(7534.1)

TT-groupUndecaprenyl diphosphate synthase(7534.1.1)

FFamilyPrenyltransf(7534.1.1.1)

Ligands

in contact, ≤ 4 Å

Enclomiphene53Q
drugDrugBank DB06735

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF01255Prenyltransf

Putative undecaprenyl diphosphate synthase

External Links

ECOD PDB View: 5CQJ RCSB PDB: 5CQJ PDBe: 5CQJ UniProt: P60472

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure