ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5c4wC1 - ECOD Domain | ECOD

ECOD/Domains/e5c4wC1

e5c4wC1

UID: 001681281

PDB

Range: C:1-242
PDB: 5C4W chain C(all domains)
UniProt: I3W9E1 (all domains)

Molecule: VP3

3D Structure

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Related Domains

Browse other domains in Rhv →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupjelly-roll(10)

HH-groupNucleoplasmin-like/VP (viral coat and capsid proteins)(10.2)

TT-groupNucleoplasmin-like/VP (viral coat and capsid proteins)(10.2.1)

FFamilyRhv(10.2.1.1)

Ligands

in contact, ≤ 4 Å

Chloride ionCL
Potassium ionK
metal
SphingosineSPH

Pfam Families

picornavirus capsid protein

ClanCL0055Nucleoplasmin

External Links

ECOD PDB View: 5C4W RCSB PDB: 5C4W PDBe: 5C4W UniProt: I3W9E1

Downloads

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within 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.