ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5a58A1 - ECOD Domain | ECOD

ECOD/Domains/e5a58A1

e5a58A1

UID: 001681808

PDB

Range: A:587-882
PDB: 5A58 chain A(all domains)
UniProt: Q2MGH6 (all domains)
Gene: SP_0368

Molecule: ENDO-ALPHA-GALACTOSAMINIDASE

3D Structure

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Related Domains

Browse other domains in Glyco_hydro_101 →

Classification

AArchitecturea/b barrels(a.16)

XX-groupTIM beta/alpha-barrel(2002)

HH-groupTIM barrels(2002.1)

TT-groupTIM barrels(2002.1.1)

FFamilyGlyco_hydro_101(2002.1.1.169)

Ligands

in contact, ≤ 4 Å

SerineSER
drugDrugBank DB00133
Calcium ionCA
metal
MANGANESE (II) IONMN

Pfam Families

PF12905Glyco_hydro_101

Endo-alpha-N-acetylgalactosaminidase

ClanCL0036TIM_barrel

External Links

ECOD PDB View: 5A58 RCSB PDB: 5A58 PDBe: 5A58 UniProt: Q2MGH6

Downloads

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metal

+ 1 additive (1,2-ETHANEDIOL)

1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.