ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4ze8B2 - ECOD Domain | ECOD

ECOD/Domains/e4ze8B2

e4ze8B2

UID: 001683997

PDB

Range: B:66-181
PDB: 4ZE8 chain B(all domains)
UniProt: Q7D2F4 (all domains)

Molecule: ABC transporter, substrate binding protein (Agrocinopines A and B)

3D Structure

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Related Domains

Browse other domains in SBP_bac_5 →

Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-beta plaits(304)

HH-groupOligo-peptide binding protein (OPPA) insertion domain(304.136)

TT-groupOligo-peptide binding protein (OPPA) insertion domain(304.136.1)

FFamilySBP_bac_5(304.136.1.1)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 2 additives (Sulfate ion, 1,2-ETHANEDIOL)

Sulfate ionSO4
DrugBank DB14546
1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00496SBP_bac_5

Bacterial extracellular solute-binding proteins, family 5 Middle

ClanCL0177PBP

External Links

ECOD PDB View: 4ZE8 RCSB PDB: 4ZE8 PDBe: 4ZE8 UniProt: Q7D2F4

Downloads

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