ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5bryA1 - ECOD Domain | ECOD

ECOD/Domains/e5bryA1

e5bryA1

UID: 001684399

PDB

Range: A:1-99
PDB: 5BRY chain A(all domains)
UniProt: P03366 (all domains)
Gene: gag-pol

Molecule: Protease

3D Structure

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Related Domains

Browse other domains in RVP →

Classification

AArchitecturebeta barrels(a.1)

XX-groupcradle loop barrel(1)

HH-groupRIFT-related(1.1)

TT-groupacid protease(1.1.1)

FFamilyRVP(1.1.1.3)

Ligands

in contact, ≤ 4 Å

(3R,3aS,4R,6aR)-4-(methylamino)hexahydrofuro[2,3-b]furan-3-yl [(2S,3R)-3-hydroxy-4-{[(4-methoxyphenyl)sulfonyl](2-methylpropyl)amino}-1-phenylbutan-2-yl]carbamate4UY
Chloride ionCL
Sodium ionNA
metal

Pfam Families

Retroviral aspartyl protease

ClanCL0129Peptidase_AA

External Links

ECOD PDB View: 5BRY RCSB PDB: 5BRY PDBe: 5BRY UniProt: P03366

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.