ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5bxsA2 - ECOD Domain | ECOD

ECOD/Domains/e5bxsA2

e5bxsA2

UID: 001684425

PDB

Range: A:519-662
PDB: 5BXS chain A(all domains)
UniProt: B3TLD6 (all domains)
Gene: lnbB

Molecule: Lacto-N-biosidase

3D Structure

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Related Domains

Browse other domains in RicinB_lectin_2 →

Classification

AArchitecturebeta duplicates or obligate multimers(a.4)

XX-groupbeta-Trefoil(6)

HH-groupbeta-Trefoil(6.1)

TT-groupbeta-Trefoil(6.1.1)

FFamilyRicinB_lectin_2(6.1.1.19)

Ligands

in contact, ≤ 4 Å

beta-D-galactopyranoseGAL

+ 1 additive (Sulfate ion)

Sulfate ionSO4
DrugBank DB14546within 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF14200RicinB_lectin_2

Ricin-type beta-trefoil lectin domain-like

ClanCL0066Trefoil

External Links

ECOD PDB View: 5BXS RCSB PDB: 5BXS PDBe: 5BXS UniProt: B3TLD6

Downloads

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