ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5ck3A1 - ECOD Domain | ECOD

ECOD/Domains/e5ck3A1

e5ck3A1

UID: 001684504

PDB

Range: A:3-135
PDB: 5CK3 chain A(all domains)
UniProt: G0S1R8 (all domains)
Gene: CTHT_0014570

Molecule: SRX domain

3D Structure

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Related Domains

Browse other domains in SRP-alpha_N →

Classification

AArchitecturea+b three layers(a.12)

XX-groupProfilin-like(223)

HH-groupprofilin-like(223.2)

TT-groupprofilin-like(223.2.1)

FFamilySRP-alpha_N(223.2.1.7)

Ligands

in contact, ≤ 4 Å

Guanosine-5'-TriphosphateGTP
drugDrugBank DB04137within 5 Å only
Magnesium ionMG
metalwithin 5 Å only

Pfam Families

PF04086SRP-alpha_N

Signal recognition particle, alpha subunit, N-terminal

ClanCL0431PF

External Links

ECOD PDB View: 5CK3 RCSB PDB: 5CK3 PDBe: 5CK3 UniProt: G0S1R8

Downloads

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+ 1 additive (Glycerin)

GlycerinGOL
DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.