ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5d9iB1 - ECOD Domain | ECOD

ECOD/Domains/e5d9iB1

e5d9iB1

UID: 001684580

PDB

Range: B:129-260
PDB: 5D9I chain B(all domains)
UniProt: P03070 (all domains)

Molecule: Large T antigen

3D Structure

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Related Domains

Browse other domains in T_Ag_DNA_bind →

Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-beta plaits(304)

HH-groupOrigin of replication-binding domains(304.55)

TT-groupOrigin of replication-binding domains(304.55.1)

FFamilyT_Ag_DNA_bind(304.55.1.4)

Ligands

in contact, ≤ 4 Å

Calcium ionCA
metal

+ 2 additives (Acetate, 1,2-ETHANEDIOL)

AcetateACT
DrugBank DB14511
1,2-ETHANEDIOL

Pfam Families

PF02217T_Ag_DNA_bind

Origin of replication binding protein

ClanCL0169Rep

External Links

ECOD PDB View: 5D9I RCSB PDB: 5D9I PDBe: 5D9I UniProt: P03070

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.