ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5ddfA1 - ECOD Domain | ECOD

ECOD/Domains/e5ddfA1

e5ddfA1

UID: 001684606

PDB

Range: A:231-587
PDB: 5DDF chain A(all domains)
UniProt: O00255 (all domains)
Gene: MEN1

Molecule: Menin

3D Structure

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Related Domains

Browse other domains in Menin →

Classification

AArchitecturealpha superhelices(a.9)

XX-groupRepetitive alpha hairpins(109)

HH-groupARM repeat(109.4)

TT-groupARM repeat(109.4.1)

FFamilyMenin(109.4.1.76)

Ligands

in contact, ≤ 4 Å

4-[4-(5,5-dimethyl-4,5-dihydro-1,3-thiazol-2-yl)piperazin-1-yl]-6-(pentafluoroethyl)thieno[2,3-d]pyrimidine5A1

+ 3 additives (Dimethyl sulfoxide, Tetraethylene glycol, Sulfate ion)

Dimethyl sulfoxideDMS
Tetraethylene glycolPG4

Pfam Families

Menin

ClanCL0125Peptidase_CA

External Links

ECOD PDB View: 5DDF RCSB PDB: 5DDF PDBe: 5DDF UniProt: O00255

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Sulfate ionSO4

Shown in the structure viewer. Drug annotations from DrugDomain.