ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4ym7EB5 - ECOD Domain | ECOD

ECOD/Domains/e4ym7EB5

e4ym7EB5

UID: 001684698

PDB

Range: EB:1041-1203
PDB: 4YM7 chain EB(all domains)
UniProt: P22138 (all domains)
Gene: RPA135

Molecule: DNA-directed RNA polymerase I subunit RPA135

3D Structure

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Related Domains

Browse other domains in RNA_pol_Rpb2_6,RNA_pol_Rpb2_7 →

Classification

AArchitecturea+b complex topology(a.14)

XX-groupC-terminal domain in beta subunit of DNA dependent RNA-polymerase(4043)

HH-groupC-terminal domain in beta subunit of DNA dependent RNA-polymerase(4043.1)

TT-groupC-terminal domain in beta subunit of DNA dependent RNA-polymerase(4043.1.1)

FFamilyRNA_pol_Rpb2_6,RNA_pol_Rpb2_7(4043.1.1.1)

Ligands

in contact, ≤ 4 Å

Zinc ionZN
metal

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00562RNA_pol_Rpb2_6

RNA polymerase Rpb2, domain 6

ClanCL0410LEF-8-like

PF04560RNA_pol_Rpb2_7

RNA polymerase Rpb2, domain 7

External Links

ECOD PDB View: 4YM7 RCSB PDB: 4YM7 PDBe: 4YM7 UniProt: P22138

Downloads

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