ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2vdcF5 - ECOD Domain | ECOD

ECOD/Domains/e2vdcF5

e2vdcF5

UID: 001686762

PDB

Range: F:423-789
PDB: 2VDC chain F(all domains)
UniProt: Q05755 (all domains)
Gene: gltB

Molecule: GLUTAMATE SYNTHASE [NADPH] LARGE CHAIN

3D Structure

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Related Domains

Browse other domains in Glu_syn_central →

Classification

AArchitecturea/b barrels(a.16)

XX-groupTIM beta/alpha-barrel(2002)

HH-groupTIM barrels(2002.1)

TT-groupTIM barrels(2002.1.1)

FFamilyGlu_syn_central(2002.1.1.133)

Ligands

in contact, ≤ 4 Å

Flavin mononucleotideFMN
drugDrugBank DB03247within 5 Å only
FE3-S4 CLUSTERF3S
within 5 Å only
Iron/sulfur cluster

Pfam Families

PF04898Glu_syn_central

Glutamate synthase central domain

ClanCL0036TIM_barrel

External Links

ECOD PDB View: 2VDC RCSB PDB: 2VDC PDBe: 2VDC UniProt: Q05755

Downloads

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within 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.