ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5boxC1 - ECOD Domain | ECOD

ECOD/Domains/e5boxC1

e5boxC1

UID: 001686962

PDB

Range: C:113-264
PDB: 5BOX chain C(all domains)
UniProt: Q8U3H1 (all domains)
Gene: trmBL2

Molecule: Putative HTH-type transcriptional regulator TrmBL2

3D Structure

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Related Domains

Browse other domains in Regulator_TrmB →

Classification

AArchitecturea+b three layers(a.12)

XX-groupPhospholipase D/nuclease(300)

HH-groupPhospholipase D/nuclease(300.1)

TT-groupPhospholipase D/nuclease(300.1.1)

FFamilyRegulator_TrmB(300.1.1.6)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 2 additives (Glycerin, (4S)-2-METHYL-2,4-PENTANEDIOL)

GlycerinGOL
DrugBank DB09462
(4S)-2-METHYL-2,4-PENTANEDIOLMPD

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF11495TrmB_EBD_N

Transcriptional regulator TrmB, EBD N-terminal subdomaim

ClanCL0479PLD

External Links

ECOD PDB View: 5BOX RCSB PDB: 5BOX PDBe: 5BOX UniProt: Q8U3H1

Downloads

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