ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5bpdA2 - ECOD Domain | ECOD

ECOD/Domains/e5bpdA2

e5bpdA2

UID: 001686967

PDB

Range: A:2-112
PDB: 5BPD chain A(all domains)
UniProt: Q8U3H1 (all domains)
Gene: trmBL2

Molecule: TrmBL2

3D Structure

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Related Domains

Browse other domains in TrmB →

Classification

AArchitecturealpha arrays(a.6)

XX-groupHTH(101)

HH-groupHTH(101.1)

TT-groupwinged helix domain(101.1.2)

FFamilyTrmB(101.1.2.30)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 1 additive (Glycerin)

GlycerinGOL
DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

Sugar-specific transcriptional regulator TrmB

ClanCL0123HTH

External Links

ECOD PDB View: 5BPD RCSB PDB: 5BPD PDBe: 5BPD UniProt: Q8U3H1

Downloads

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