ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5bqtD1 - ECOD Domain | ECOD

ECOD/Domains/e5bqtD1

e5bqtD1

UID: 001686988

PDB

Range: D:113-263
PDB: 5BQT chain D(all domains)
UniProt: Q8U3H1 (all domains)
Gene: trmBL2

Molecule: Putative HTH-type transcriptional regulator TrmBL2

3D Structure

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Related Domains

Browse other domains in Regulator_TrmB →

Classification

AArchitecturea+b three layers(a.12)

XX-groupPhospholipase D/nuclease(300)

HH-groupPhospholipase D/nuclease(300.1)

TT-groupPhospholipase D/nuclease(300.1.1)

FFamilyRegulator_TrmB(300.1.1.6)

Ligands

in contact, ≤ 4 Å

Calcium ionCA
metal

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF11495TrmB_EBD_N

Transcriptional regulator TrmB, EBD N-terminal subdomaim

ClanCL0479PLD

External Links

ECOD PDB View: 5BQT RCSB PDB: 5BQT PDBe: 5BQT UniProt: Q8U3H1

Downloads

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