ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4y5dC1 - ECOD Domain | ECOD

ECOD/Domains/e4y5dC1

e4y5dC1

UID: 001687663

PDB

Range: C:15-136
PDB: 4Y5D chain C(all domains)
UniProt: P22629 (all domains)

Molecule: Streptavidin

3D Structure

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Related Domains

Browse other domains in Avidin →

Classification

AArchitecturebeta barrels(a.1)

XX-groupLipocalins/Streptavidin(9)

HH-groupAvidin/Streptavidin(9.2)

TT-groupAvidin/Streptavidin(9.2.1)

FFamilyAvidin(9.2.1.1)

Ligands

in contact, ≤ 4 Å

Hexaethylene glycolP6G
methyl 3-(4-oxo-4,5-dihydrofuro[3,2-c]pyridin-2-yl)benzoateMT6
within 5 Å only

+ 1 additive (Dimethyl sulfoxide)

Dimethyl sulfoxideDMS

Pfam Families

Avidin family

External Links

ECOD PDB View: 4Y5D RCSB PDB: 4Y5D PDBe: 4Y5D UniProt: P22629

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB01093

Shown in the structure viewer. Drug annotations from DrugDomain.