ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4yw9A1 - ECOD Domain | ECOD

ECOD/Domains/e4yw9A1

e4yw9A1

UID: 001687709

PDB

Range: A:-1-259
PDB: 4YW9 chain A(all domains)
UniProt: P07379 (all domains)
Gene: Pck1

Molecule: Phosphoenolpyruvate carboxykinase, cytosolic [GTP]

3D Structure

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Related Domains

Browse other domains in PEPCK_N →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupP-loop domains-like(2004)

HH-groupPEP carboxykinase N-terminal domain(2004.11)

TT-groupPEP carboxykinase N-terminal domain(2004.11.1)

FFamilyPEPCK_N(2004.11.1.2)

Ligands

in contact, ≤ 4 Å

Guanosine-5'-TriphosphateGTP
drugDrugBank DB04137within 5 Å only
3-sulfanylpyridine-2-carboxylic acid1WD
MANGANESE (II) IONMN

Pfam Families

PF17297PEPCK_N

Phosphoenolpyruvate carboxykinase N-terminal domain

External Links

ECOD PDB View: 4YW9 RCSB PDB: 4YW9 PDBe: 4YW9 UniProt: P07379

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

metal

Sodium ionNA

metal

+ 2 additives (Pentaethylene glycol, Methanol)

Pentaethylene glycol1PE
MethanolMOH

Shown in the structure viewer. Drug annotations from DrugDomain.