ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5bygA1 - ECOD Domain | ECOD

ECOD/Domains/e5bygA1

e5bygA1

UID: 001687985

PDB

Range: A:1-13,A:34-201
PDB: 5BYG chain A(all domains)
UniProt: Q89268 (all domains)
Gene: Rep78

Molecule: Protein Rep78

3D Structure

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Related Domains

Browse other domains in Rep_N →

Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-beta plaits(304)

HH-groupOrigin of replication-binding domains(304.55)

TT-groupOrigin of replication-binding domains(304.55.1)

FFamilyRep_N(304.55.1.7)

Ligands

in contact, ≤ 4 Å

Magnesium ionMG
metal

+ 1 additive (Citric acid)

Citric acidCIT
DrugBank DB04272

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

Rep protein catalytic domain like

ClanCL0169Rep

External Links

ECOD PDB View: 5BYG RCSB PDB: 5BYG PDBe: 5BYG UniProt: Q89268

Downloads

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