ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5dm0B1 - ECOD Domain | ECOD

ECOD/Domains/e5dm0B1

e5dm0B1

UID: 001688235

PDB

Range: B:-1-270
PDB: 5DM0 chain B(all domains)
UniProt: A7Z2A9 (all domains)
Gene: RBAM_007500

Molecule: plantazolicin methyltransferase BamL

3D Structure

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Related Domains

Browse other domains in Methyltransf_31 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupS-adenosyl-L-methionine-dependent methyltransferases(2003.1.5)

FFamilyMethyltransf_31(2003.1.5.82)

Ligands

in contact, ≤ 4 Å

S-adenosyl-L-homocysteineSAH
drugDrugBank DB01752
ethyl 2-(2-{2-[(1S)-1-amino-4-carbamimidamidobutyl]-1,3-thiazol-4-yl}-5-methyl-1,3-oxazol-4-yl)-1,3-thiazole-4-carboxylate5D8

+ 1 additive (Sulfate ion)

Pfam Families

PF13847Methyltransf_31

Methyltransferase domain

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 5DM0 RCSB PDB: 5DM0 PDBe: 5DM0 UniProt: A7Z2A9

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Sulfate ionSO4

DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.