ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5d3gC1 - ECOD Domain | ECOD

ECOD/Domains/e5d3gC1

e5d3gC1

UID: 001688917

PDB

Range: C:429-553
PDB: 5D3G chain C(all domains)
UniProt: P03366 (all domains)
Gene: gag-pol

Molecule: HIV-1 REVERSE TRANSCRIPTASE P66 subunit

3D Structure

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Related Domains

Browse other domains in RNase_H →

Classification

AArchitecturemixed a+b and a/b(a.18)

XX-groupRibonuclease H-like(2484)

HH-groupRibonuclease H-like(2484.1)

TT-groupRibonuclease H-like(2484.1.1)

FFamilyRNase_H(2484.1.1.4)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 1 additive (Sulfate ion)

Sulfate ionSO4
DrugBank DB14546within 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00075RNase_H

RNase H

ClanCL0219RNase_H

External Links

ECOD PDB View: 5D3G RCSB PDB: 5D3G PDBe: 5D3G UniProt: P03366

Downloads

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