ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5d3gC3 - ECOD Domain | ECOD

ECOD/Domains/e5d3gC3

e5d3gC3

UID: 001688919

PDB

Range: C:241-316
PDB: 5D3G chain C(all domains)
UniProt: P03366 (all domains)
Gene: gag-pol

Molecule: HIV-1 REVERSE TRANSCRIPTASE P66 subunit

3D Structure

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Related Domains

Browse other domains in RVT_thumb →

Classification

AArchitecturealpha bundles(a.7)

XX-grouphelical bundle domain in reverse transcriptase-like polymerases(4967)

HH-grouphelical bundle domain in reverse transcriptase-like polymerases(4967.1)

TT-grouphelical bundle domain in reverse transcriptase-like polymerases(4967.1.1)

FFamilyRVT_thumb(4967.1.1.9)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 1 additive (Glycerin)

GlycerinGOL
DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF06817RVT_thumb

Reverse transcriptase thumb domain

External Links

ECOD PDB View: 5D3G RCSB PDB: 5D3G PDBe: 5D3G UniProt: P03366

Downloads

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