ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5do8A2 - ECOD Domain | ECOD

ECOD/Domains/e5do8A2

e5do8A2

UID: 001688950

PDB

Range: A:3-477
PDB: 5DO8 chain A(all domains)
UniProt: Q8YAE6 (all domains)
Gene: lmo0184

Molecule: Lmo0184 protein

3D Structure

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Related Domains

Browse other domains in Alpha-amylase →

Classification

AArchitecturea/b barrels(a.16)

XX-groupTIM beta/alpha-barrel(2002)

HH-groupTIM barrels(2002.1)

TT-groupTIM barrels(2002.1.1)

FFamilyAlpha-amylase(2002.1.1.4)

Ligands

in contact, ≤ 4 Å

Beta-D-GlucoseBGC
drugDrugBank DB02379
Chloride ionCL

+ 1 additive (2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL)

2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL

Pfam Families

PF00128Alpha-amylase

Alpha amylase, catalytic domain

ClanCL0036TIM_barrel

External Links

ECOD PDB View: 5DO8 RCSB PDB: 5DO8 PDBe: 5DO8 UniProt: Q8YAE6

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.