ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4nxoB4 - ECOD Domain | ECOD

ECOD/Domains/e4nxoB4

e4nxoB4

UID: 001691978

PDB

Range: B:764-1011
PDB: 4NXO chain B(all domains)
UniProt: P14735 (all domains)
Gene: IDE

Molecule: Insulin-degrading enzyme

3D Structure

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Related Domains

Browse other domains in PqqF-like_C_4 →

Classification

AArchitecturea+b two layers(a.11)

XX-groupLuxS, MPP, ThrRS/AlaRS common domain(309)

HH-groupLuxS, MPP, ThrRS/AlaRS common domain(309.1)

TT-groupLuxS/MPP-like metallohydrolase(309.1.1)

FFamilyPqqF-like_C_4(309.1.1.11)

Ligands

in contact, ≤ 4 Å

4-fluoro-N-({1-[(2R)-4-(hydroxyamino)-1-(naphthalen-2-yl)-4-oxobutan-2-yl]-1H-1,2,3-triazol-4-yl}methyl)benzamide2H7
Zinc ionZN
metalwithin 5 Å only

+ 2 additives (HEPES, 1,2-ETHANEDIOL)

Pfam Families

PF22456PqqF-like_C_4

PQQ synthase PqqF-like, C-terminal lobe domain 4

ClanCL0094Peptidase_ME

External Links

ECOD PDB View: 4NXO RCSB PDB: 4NXO PDBe: 4NXO UniProt: P14735

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

HEPES

DrugBank DB16872

1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.