ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4ztfA1 - ECOD Domain | ECOD

ECOD/Domains/e4ztfA1

e4ztfA1

UID: 001692206

PDB

Range: A:109-312
PDB: 4ZTF chain A(all domains)
UniProt: P14350 (all domains)
Gene: pol

Molecule: Integrase

3D Structure

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Related Domains

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Classification

AArchitecturemixed a+b and a/b(a.18)

XX-groupRibonuclease H-like(2484)

HH-groupRibonuclease H-like(2484.1)

TT-groupRibonuclease H-like(2484.1.1)

FFamilyrve(2484.1.1.9)

Ligands

in contact, ≤ 4 Å

Magnesium ionMG
metal
(1R,2R,5S)-8'-(3-chloro-4-fluorobenzyl)-6'-hydroxy-2'-[(2S)-2-hydroxypropyl]-9',10'-dihydro-2'H-spiro[bicyclo[3.1.0]hexane-2,3'-imidazo[5,1-a][2,6]naphthyridine]-1',5',7'(8'H)-trioneX2P

+ 1 additive (Glycerin)

Pfam Families

Integrase core domain

ClanCL0219RNase_H

External Links

ECOD PDB View: 4ZTF RCSB PDB: 4ZTF PDBe: 4ZTF UniProt: P14350

Downloads

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GlycerinGOL

DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.