ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5cbmL2 - ECOD Domain | ECOD

ECOD/Domains/e5cbmL2

e5cbmL2

UID: 001692350

PDB

Range: L:86-109,L:286-603
PDB: 5CBM chain L(all domains)
UniProt: A0A024V0B1 (all domains)
Gene: PFFVO_05086

Molecule: M17 family aminopeptidase

3D Structure

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Related Domains

Browse other domains in Peptidase_M17 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupPhosphorylase/hydrolase-like(2011)

HH-groupZn-dependent exopeptidases(2011.1)

TT-groupZn-dependent exopeptidases(2011.1.1)

FFamilyPeptidase_M17(2011.1.1.3)

Ligands

in contact, ≤ 4 Å

(2S)-2-{[(R)-[(R)-amino(phenyl)methyl](hydroxy)phosphoryl]methyl}-4-methylpentanoic acid4ZN
Zinc ionZN
metal

+ 3 additives (Carbonate ion, Sulfate ion, Pentaethylene glycol)

Carbonate ion

Pfam Families

PF00883Peptidase_M17

Cytosol aminopeptidase family, catalytic domain

ClanCL0865ZnExoPePases

External Links

ECOD PDB View: 5CBM RCSB PDB: 5CBM PDBe: 5CBM UniProt: A0A024V0B1

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB14531

Sulfate ionSO4

DrugBank DB14546

Pentaethylene glycol1PE

Shown in the structure viewer. Drug annotations from DrugDomain.