ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5cqdC1 - ECOD Domain | ECOD

ECOD/Domains/e5cqdC1

e5cqdC1

UID: 001692385

PDB

Range: C:188-379
PDB: 5CQD chain C(all domains)
UniProt: Q9UH17 (all domains)
Gene: APOBEC3B

Molecule: DNA dC->dU-editing enzyme APOBEC-3B

3D Structure

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Related Domains

Browse other domains in NAD2 →

Classification

AArchitecturea+b three layers(a.12)

XX-groupCytidine deaminase-like(2492)

HH-groupCytidine deaminase-like(2492.1)

TT-groupCytidine deaminase-like(2492.1.1)

FFamilyNAD2(2492.1.1.23)

Ligands

in contact, ≤ 4 Å

Zinc ionZN
metal

+ 1 additive (Glycerin)

GlycerinGOL
DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF18782APOBEC3

APOBEC3, cytosine deaminase domain

ClanCL0109CDA

External Links

ECOD PDB View: 5CQD RCSB PDB: 5CQD PDBe: 5CQD UniProt: Q9UH17

Downloads

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