ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5cqhA1 - ECOD Domain | ECOD

ECOD/Domains/e5cqhA1

e5cqhA1

UID: 001692386

PDB

Range: A:189-379
PDB: 5CQH chain A(all domains)
UniProt: Q9UH17 (all domains)
Gene: APOBEC3B

Molecule: DNA dC-dU-editing enzyme APOBEC-3B

3D Structure

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Related Domains

Browse other domains in NAD2 →

Classification

AArchitecturea+b three layers(a.12)

XX-groupCytidine deaminase-like(2492)

HH-groupCytidine deaminase-like(2492.1)

TT-groupCytidine deaminase-like(2492.1.1)

FFamilyNAD2(2492.1.1.23)

Ligands

in contact, ≤ 4 Å

2'-Deoxycytidine-5'-MonophosphateDC
drugDrugBank DB03798
Chloride ionCL
Zinc ionZN

Pfam Families

PF18782APOBEC3

APOBEC3, cytosine deaminase domain

ClanCL0109CDA

External Links

ECOD PDB View: 5CQH RCSB PDB: 5CQH PDBe: 5CQH UniProt: Q9UH17

Downloads

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metal

+ 1 additive (1,2-ETHANEDIOL)

1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.