ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5cqkA1 - ECOD Domain | ECOD

ECOD/Domains/e5cqkA1

e5cqkA1

UID: 001692388

PDB

Range: A:190-378
PDB: 5CQK chain A(all domains)
UniProt: Q9UH17 (all domains)
Gene: APOBEC3B

Molecule: DNA dC->dU-editing enzyme APOBEC-3B

3D Structure

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Related Domains

Browse other domains in NAD2 →

Classification

AArchitecturea+b three layers(a.12)

XX-groupCytidine deaminase-like(2492)

HH-groupCytidine deaminase-like(2492.1)

TT-groupCytidine deaminase-like(2492.1.1)

FFamilyNAD2(2492.1.1.23)

Ligands

in contact, ≤ 4 Å

Sodium ionNA
metal
Zinc ionZN
metal

+ 2 additives (Glycerin, Triethylene glycol)

GlycerinGOL

Pfam Families

PF18782APOBEC3

APOBEC3, cytosine deaminase domain

ClanCL0109CDA

External Links

ECOD PDB View: 5CQK RCSB PDB: 5CQK PDBe: 5CQK UniProt: Q9UH17

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB09462

Triethylene glycolPGE

DrugBank DB02327

Shown in the structure viewer. Drug annotations from DrugDomain.