ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3epmA1 - ECOD Domain | ECOD

ECOD/Domains/e3epmA1

e3epmA1

UID: 000169301

PDB

Range: A:13-546
PDB: 3EPM chain A(all domains)
UniProt: Q9A6Q5 (all domains)
Gene: thiC

Molecule: Thiamine biosynthesis protein thiC

3D Structure

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Related Domains

Browse other domains in ThiC_Rad_SAM,ThiC-associated →

Classification

AArchitecturea/b barrels(a.16)

XX-groupTIM beta/alpha-barrel(2002)

HH-groupTIM barrels(2002.1)

TT-groupTIM barrels(2002.1.1)

FFamilyThiC_Rad_SAM,ThiC-associated(2002.1.1.82)

Ligands

in contact, ≤ 4 Å

4-Amino-5-Hydroxymethyl-2-MethylpyrimidineHMH
drugDrugBank DB02022
Zinc ionZN
metal

+ 1 additive (Sulfate ion)

Pfam Families

PF01964ThiC_Rad_SAM

Radical SAM ThiC family

ClanCL0036TIM_barrel

PF13667ThiC-associated

ThiC-associated domain

External Links

ECOD PDB View: 3EPM RCSB PDB: 3EPM PDBe: 3EPM UniProt: Q9A6Q5

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Sulfate ionSO4

DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.