ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3o5aA4 - ECOD Domain | ECOD

ECOD/Domains/e3o5aA4

e3o5aA4

UID: 001693065

PDB

Range: A:11-67
PDB: 3O5A chain A(all domains)
UniProt: P39185 (all domains)
Gene: napA

Molecule: Periplasmic nitrate reductase

3D Structure

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Related Domains

Browse other domains in Molybdop_Fe4S4 →

Classification

AArchitecturea+b two layers(a.11)

XX-groupFormate dehydrogenase/DMSO reductase, domain 1(1001)

HH-groupFormate dehydrogenase/DMSO reductase, domain 1(1001.1)

TT-groupFormate dehydrogenase/DMSO reductase, domain 1(1001.1.1)

FFamilyMolybdop_Fe4S4(1001.1.1.1)

Ligands

in contact, ≤ 4 Å

Ferroheme CHEC
drugDrugBank DB03317
2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDEMGD
Iron/sulfur cluster

Pfam Families

PF04879Molybdop_Fe4S4

Molybdopterin oxidoreductase Fe4S4 domain

ClanCL03444Fe-4S

External Links

ECOD PDB View: 3O5A RCSB PDB: 3O5A PDBe: 3O5A UniProt: P39185

Downloads

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+ 1 additive (Formic acid)

Formic acidFMT
DrugBank DB01942

Shown in the structure viewer. Drug annotations from DrugDomain.