ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e3bvjA1 - ECOD Domain | ECOD

ECOD/Domains/e3bvjA1

e3bvjA1

UID: 000169468

PDB

Range: A:34-290
PDB: 3BVJ chain A(all domains)
UniProt: P11172 (all domains)
Gene: UMPS

Molecule: Uridine 5'-monophosphate synthase

3D Structure

Loading viewer...

Related Domains

Browse other domains in OMPdecase →

Classification

AArchitecturea/b barrels(a.16)

XX-groupTIM beta/alpha-barrel(2002)

HH-groupTIM barrels(2002.1)

TT-groupTIM barrels(2002.1.1)

FFamilyOMPdecase(2002.1.1.9)

Ligands

in contact, ≤ 4 Å

5-monophosphate-9-beta-D-ribofuranosyl xanthineXMP
drugDrugBank DB02309

+ 2 additives (Glycerin, Sulfate ion)

GlycerinGOL
DrugBank DB09462

Pfam Families

PF00215OMPdecase

Orotidine 5'-phosphate decarboxylase / HUMPS family

ClanCL0036TIM_barrel

External Links

ECOD PDB View: 3BVJ RCSB PDB: 3BVJ PDBe: 3BVJ UniProt: P11172

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Sulfate ionSO4

DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.