ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4wf9G1 - ECOD Domain | ECOD

ECOD/Domains/e4wf9G1

e4wf9G1

UID: 001695039

PDB

Range: G:1-145
PDB: 4WF9 chain G(all domains)
UniProt: Q2FW38 (all domains)
Gene: rplM

Molecule: 50S ribosomal protein L13

3D Structure

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Related Domains

Browse other domains in Ribosomal_L13 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRibosomal protein L13/L15p/L18e/L32e(2490)

HH-groupRibosomal protein L13 and L16-A(2490.2)

TT-groupRibosomal protein L13 and L16-A(2490.2.1)

FFamilyRibosomal_L13(2490.2.1.1)

Ligands

in contact, ≤ 4 Å

Magnesium ionMG
metal
MANGANESE (II) IONMN
metal

+ 1 additive ((4r)-2-Methylpentane-2,4-Diol)

(4r)-2-Methylpentane-2,4-DiolMPD

Pfam Families

PF00572Ribosomal_L13

Ribosomal protein L13

External Links

ECOD PDB View: 4WF9 RCSB PDB: 4WF9 PDBe: 4WF9 UniProt: Q2FW38

Downloads

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DrugBank DB03564

Shown in the structure viewer. Drug annotations from DrugDomain.