ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4ykiB2 - ECOD Domain | ECOD

ECOD/Domains/e4ykiB2

e4ykiB2

UID: 001695173

PDB

Range: B:1-110,B:213-255
PDB: 4YKI chain B(all domains)
UniProt: A0A0R4I973 (all domains)
Gene: ML032222a

Molecule: ML032222a iGluR

3D Structure

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Related Domains

Browse other domains in Lig_chan-Glu_bd →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupPeriplasmic binding protein-like II(7523)

HH-groupPeriplasmic binding protein-like II(7523.1)

TT-groupPeriplasmic binding protein-like II(7523.1.1)

FFamilyLig_chan-Glu_bd(7523.1.1.20)

Ligands

in contact, ≤ 4 Å

GlycineGLY
drugDrugBank DB00145
Magnesium ionMG
metal

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF10613Lig_chan-Glu_bd

Ligated ion channel L-glutamate- and glycine-binding site

ClanCL0177PBP

External Links

ECOD PDB View: 4YKI RCSB PDB: 4YKI PDBe: 4YKI UniProt: A0A0R4I973

Downloads

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