ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4ykjA1 - ECOD Domain | ECOD

ECOD/Domains/e4ykjA1

e4ykjA1

UID: 001695174

PDB

Range: A:5-110,A:213-251
PDB: 4YKJ chain A(all domains)
UniProt: A0A0R4I973 (all domains)
Gene: ML032222a

Molecule: ML032222a iGluR

3D Structure

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Related Domains

Browse other domains in Lig_chan-Glu_bd →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupPeriplasmic binding protein-like II(7523)

HH-groupPeriplasmic binding protein-like II(7523.1)

TT-groupPeriplasmic binding protein-like II(7523.1.1)

FFamilyLig_chan-Glu_bd(7523.1.1.20)

Ligands

in contact, ≤ 4 Å

AlanineALA
drugDrugBank DB00160
GlycineGLY
drugDrugBank DB00145

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF10613Lig_chan-Glu_bd

Ligated ion channel L-glutamate- and glycine-binding site

ClanCL0177PBP

External Links

ECOD PDB View: 4YKJ RCSB PDB: 4YKJ PDBe: 4YKJ UniProt: A0A0R4I973

Downloads

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