ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5cm2M1 - ECOD Domain | ECOD

ECOD/Domains/e5cm2M1

e5cm2M1

UID: 001695430

PDB

Range: M:1-124
PDB: 5CM2 chain M(all domains)
UniProt: Q6C4P5 (all domains)
Gene: YALI0_E24761g

Molecule: TRNA METHYLTRANSFERASE ACTIVATOR SUBUNIT

3D Structure

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Related Domains

Browse other domains in Trm112p →

Classification

AArchitecturefew secondary structure elements(a.19)

XX-groupTrm112p-like(4294)

HH-groupTrm112p-like(4294.1)

TT-groupTrm112p-like(4294.1.1)

FFamilyTrm112p(4294.1.1.2)

Ligands

in contact, ≤ 4 Å

Zinc ionZN
metal

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF03966Trm112p

Trm112p-like protein

ClanCL0167Zn_Beta_Ribbon

External Links

ECOD PDB View: 5CM2 RCSB PDB: 5CM2 PDBe: 5CM2 UniProt: Q6C4P5

Downloads

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