ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5cx8A1 - ECOD Domain | ECOD

ECOD/Domains/e5cx8A1

e5cx8A1

UID: 001695433

PDB

Range: A:30-501
PDB: 5CX8 chain A(all domains)
UniProt: F5H948 (all domains)
Gene: ragB

Molecule: Lipoprotein RagB

3D Structure

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Related Domains

Browse other domains in SusD family / Starch-binding associating with outer membrane →

Classification

AArchitecturealpha superhelices(a.9)

XX-groupRepetitive alpha hairpins(109)

HH-groupARM repeat(109.4)

TT-groupARM repeat(109.4.1)

FFamilySusD family / Starch-binding associating with outer membrane(109.4.1.105)

Ligands

in contact, ≤ 4 Å

Fructose -6-PhosphateTG6
drugDrugBank DB04277
3-deoxy-beta-D-glucopyranose3DO
3-deoxy-5-O-phosphono-beta-D-ribofuranoseRP3

Pfam Families

PF07980SusD_RagB

SusD family

ClanCL0020TPR

PF14322SusD-like_3

Starch-binding associating with outer membrane

ClanCL0020TPR

External Links

ECOD PDB View: 5CX8 RCSB PDB: 5CX8 PDBe: 5CX8 UniProt: F5H948

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

+ 2 additives (Acetate, Glycerin)

AcetateACT
DrugBank DB14511
GlycerinGOL
DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.