ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5d1cB1 - ECOD Domain | ECOD

ECOD/Domains/e5d1cB1

e5d1cB1

UID: 001695438

PDB

Range: B:14-377
PDB: 5D1C chain B(all domains)
UniProt: Q9BY41 (all domains)
Gene: HDAC8

Molecule: Histone deacetylase 8

3D Structure

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Related Domains

Browse other domains in Hist_deacetyl →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupHAD domain-like(2006)

HH-groupHAD domain-related(2006.1)

TT-groupArginase/deacetylase(2006.1.5)

FFamilyHist_deacetyl(2006.1.5.2)

Ligands

in contact, ≤ 4 Å

Potassium ionK
metal
Zinc ionZN
metal

+ 1 additive (Glycerin)

Glycerin

Pfam Families

PF00850Hist_deacetyl

Histone deacetylase domain

ClanCL0302Arginase

External Links

ECOD PDB View: 5D1C RCSB PDB: 5D1C PDBe: 5D1C UniProt: Q9BY41

Downloads

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DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.