ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4x7fA1 - ECOD Domain | ECOD

ECOD/Domains/e4x7fA1

e4x7fA1

UID: 001696630

PDB

Range: A:225-538
PDB: 4X7F chain A(all domains)
UniProt: Q5F4T5 (all domains)

Molecule: Capsid protein

3D Structure

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Related Domains

Browse other domains in Calici_coat_C →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupjelly-roll(10)

HH-groupNucleoplasmin-like/VP (viral coat and capsid proteins)(10.2)

TT-groupNucleoplasmin-like/VP (viral coat and capsid proteins)(10.2.1)

FFamilyCalici_coat_C(10.2.1.43)

Ligands

in contact, ≤ 4 Å

Sodium ionNA
metal

+ 3 additives (Imidazole, Phosphate ion, 1,2-ETHANEDIOL)

ImidazoleIMD
DrugBank DB03366
Phosphate ionPO4

Pfam Families

PF08435Calici_coat_C

Calicivirus coat protein C-terminal

ClanCL0055Nucleoplasmin

External Links

ECOD PDB View: 4X7F RCSB PDB: 4X7F PDBe: 4X7F UniProt: Q5F4T5

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB14523

1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.