ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2zl5A1 - ECOD Domain | ECOD

ECOD/Domains/e2zl5A1

e2zl5A1

UID: 001696666

PDB

Range: A:231-519
PDB: 2ZL5 chain A(all domains)
UniProt: Q83884 (all domains)
Gene: ORF2

Molecule: 58 kd capsid protein

3D Structure

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Related Domains

Browse other domains in Calicivirus coat protein / Calicivirus coat protein C-terminal →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupjelly-roll(10)

HH-groupNucleoplasmin-like/VP (viral coat and capsid proteins)(10.2)

TT-groupNucleoplasmin-like/VP (viral coat and capsid proteins)(10.2.1)

FFamilyCalicivirus coat protein / Calicivirus coat protein C-terminal(10.2.1.14)

Ligands

in contact, ≤ 4 Å

Calcium ionCA
metal
Magnesium ionMG
metal

+ 1 additive (Acetate)

Acetate

Pfam Families

PF00915Calici_coat

Calicivirus coat protein

ClanCL0055Nucleoplasmin

PF08435Calici_coat_C

Calicivirus coat protein C-terminal

ClanCL0055Nucleoplasmin

External Links

ECOD PDB View: 2ZL5 RCSB PDB: 2ZL5 PDBe: 2ZL5 UniProt: Q83884

Downloads

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DrugBank DB14511

Shown in the structure viewer. Drug annotations from DrugDomain.