ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2zl6B1 - ECOD Domain | ECOD

ECOD/Domains/e2zl6B1

e2zl6B1

UID: 001696669

PDB

Range: B:230-516
PDB: 2ZL6 chain B(all domains)
UniProt: Q83884 (all domains)
Gene: ORF2

Molecule: 58 kd capsid protein

3D Structure

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Related Domains

Browse other domains in Calicivirus coat protein / Calicivirus coat protein C-terminal →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupjelly-roll(10)

HH-groupNucleoplasmin-like/VP (viral coat and capsid proteins)(10.2)

TT-groupNucleoplasmin-like/VP (viral coat and capsid proteins)(10.2.1)

FFamilyCalicivirus coat protein / Calicivirus coat protein C-terminal(10.2.1.14)

Ligands

in contact, ≤ 4 Å

Magnesium ionMG
metal

+ 1 additive (Acetate)

AcetateACT
DrugBank DB14511

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00915Calici_coat

Calicivirus coat protein

ClanCL0055Nucleoplasmin

PF08435Calici_coat_C

Calicivirus coat protein C-terminal

ClanCL0055Nucleoplasmin

External Links

ECOD PDB View: 2ZL6 RCSB PDB: 2ZL6 PDBe: 2ZL6 UniProt: Q83884

Downloads

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