ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4z4vB1 - ECOD Domain | ECOD

ECOD/Domains/e4z4vB1

e4z4vB1

UID: 001696768

PDB

Range: B:224-538
PDB: 4Z4V chain B(all domains)
UniProt: Q5F4T5 (all domains)

Molecule: Capsid protein

3D Structure

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Related Domains

Browse other domains in Calici_coat_C →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupjelly-roll(10)

HH-groupNucleoplasmin-like/VP (viral coat and capsid proteins)(10.2)

TT-groupNucleoplasmin-like/VP (viral coat and capsid proteins)(10.2.1)

FFamilyCalici_coat_C(10.2.1.43)

Ligands

in contact, ≤ 4 Å

beta-L-fucoseFUL
drugDrugBank DB03283

+ 2 additives (Nitrate, 1,2-ETHANEDIOL)

NitrateNO3
DrugBank DB14049

Pfam Families

PF08435Calici_coat_C

Calicivirus coat protein C-terminal

ClanCL0055Nucleoplasmin

External Links

ECOD PDB View: 4Z4V RCSB PDB: 4Z4V PDBe: 4Z4V UniProt: Q5F4T5

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

1,2-ETHANEDIOL

Shown in the structure viewer. Drug annotations from DrugDomain.