ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e3dcmX1 - ECOD Domain | ECOD

ECOD/Domains/e3dcmX1

e3dcmX1

UID: 000169725

RepresentativePDB

Range: X:1-188
PDB: 3DCM chain X(all domains)
UniProt: Q9X1Q6 (all domains)
Gene: TM_1570

Molecule: Uncharacterized protein TM_1570

3D Structure

Loading viewer...

Related Domains

Browse other domains in Methyltrn_RNA_4 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupalpha/beta knot(2488)

HH-groupalpha/beta knot(2488.1)

TT-groupalpha/beta knot(2488.1.1)

FFamilyMethyltrn_RNA_4(2488.1.1.13)

Ligands

in contact, ≤ 4 Å

AdemetionineSAM
drugDrugBank DB00118

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF09936Methyltrn_RNA_4

SAM-dependent RNA methyltransferase

ClanCL0098SPOUT

External Links

ECOD PDB View: 3DCM RCSB PDB: 3DCM PDBe: 3DCM UniProt: Q9X1Q6

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure