ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5dedH1 - ECOD Domain | ECOD

ECOD/Domains/e5dedH1

e5dedH1

UID: 001698317

PDB

Range: H:3-196
PDB: 5DED chain H(all domains)
UniProt: O31611 (all domains)
Gene: yjbM

Molecule: GTP pyrophosphokinase YjbM

3D Structure

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Related Domains

Browse other domains in RelA_SpoT →

Classification

AArchitecturea+b three layers(a.12)

XX-groupNucleotidyltransferase-like(316)

HH-groupNucleotidyltransferase(316.1)

TT-groupNucleotidyltransferase(316.1.1)

FFamilyRelA_SpoT(316.1.1.13)

Ligands

in contact, ≤ 4 Å

guanosine 5'-(tetrahydrogen triphosphate) 3'-(trihydrogen diphosphate)0O2
Magnesium ionMG
metalwithin 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF04607RelA_SpoT

Region found in RelA / SpoT proteins

ClanCL0260NTP_transf

External Links

ECOD PDB View: 5DED RCSB PDB: 5DED PDBe: 5DED UniProt: O31611

Downloads

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