ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5dkiN1 - ECOD Domain | ECOD

ECOD/Domains/e5dkiN1

e5dkiN1

UID: 001698387

PDB

Range: N:1-196
PDB: 5DKI chain N(all domains)
UniProt: P38624 (all domains)
Gene: PRE3

Molecule: Proteasome subunit beta type-1

3D Structure

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Related Domains

Browse other domains in Proteasome →

Classification

AArchitecturea+b four layers(a.13)

XX-groupNtn/PP2C(210)

HH-groupNtn(210.1)

TT-groupProteasome subunits(210.1.1)

FFamilyProteasome(210.1.1.1)

Ligands

in contact, ≤ 4 Å

[(1~{R})-1-[[(2~{S})-2-(hex-5-ynoylamino)-3-phenyl-propanoyl]amino]-3-methyl-butyl]boronic acid5BZ
Chloride ionCL
Magnesium ionMG

Pfam Families

PF00227Proteasome

Proteasome subunit

ClanCL0052NTN

External Links

ECOD PDB View: 5DKI RCSB PDB: 5DKI PDBe: 5DKI UniProt: P38624

Downloads

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metal

Shown in the structure viewer. Drug annotations from DrugDomain.