ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5dkjN1 - ECOD Domain | ECOD

ECOD/Domains/e5dkjN1

e5dkjN1

UID: 001698415

PDB

Range: N:1-196
PDB: 5DKJ chain N(all domains)
UniProt: P38624 (all domains)
Gene: PRE3

Molecule: Proteasome subunit beta type-1

3D Structure

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Related Domains

Browse other domains in Proteasome →

Classification

AArchitecturea+b four layers(a.13)

XX-groupNtn/PP2C(210)

HH-groupNtn(210.1)

TT-groupProteasome subunits(210.1.1)

FFamilyProteasome(210.1.1.1)

Ligands

in contact, ≤ 4 Å

{2-[2-(2-{4-[(1E)-4-{[(2S)-1-{[(1R)-1-(dihydroxyboranyl)-3-methylbutyl]amino}-1-oxo-3-phenylpropan-2-yl]amino}-4-oxobut-1-en-1-yl]-1H-1,2,3-triazol-1-yl}ethoxy)ethoxy]ethoxy}acetic acid5BY
Chloride ionCL
Magnesium ionMG

Pfam Families

PF00227Proteasome

Proteasome subunit

ClanCL0052NTN

External Links

ECOD PDB View: 5DKJ RCSB PDB: 5DKJ PDBe: 5DKJ UniProt: P38624

Downloads

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metal

Shown in the structure viewer. Drug annotations from DrugDomain.