ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e3d2hA1 - ECOD Domain | ECOD

ECOD/Domains/e3d2hA1

e3d2hA1

UID: 001698668

PDB

Range: A:242-523
PDB: 3D2H chain A(all domains)
UniProt: P30986 (all domains)
Gene: BBE1

Molecule: berberine bridge-forming enzyme

3D Structure

Loading viewer...

Related Domains

Browse other domains in BBE →

Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-beta plaits(304)

HH-groupFAD-linked oxidases, C-terminal domain(304.6)

TT-groupFAD-linked oxidases, C-terminal domain(304.6.1)

FFamilyBBE(304.6.1.3)

Ligands

in contact, ≤ 4 Å

Flavin adenine dinucleotideFAD
drugDrugBank DB03147
N-AcetylglucosamineNAG
drugDrugBank DB00141

Pfam Families

Berberine and berberine like

ClanCL0277FAD-oxidase_C

External Links

ECOD PDB View: 3D2H RCSB PDB: 3D2H PDBe: 3D2H UniProt: P30986

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

(2R,3S,4S)-5-[(4R)-6',7'-dimethyl-2,3',5-trioxo-1'H-spiro[imidazolidine-4,2'-quinoxalin]-4'(3'H)-yl]-2,3,4-trihydroxypentyl-adenosine diphosphate

Shown in the structure viewer. Drug annotations from DrugDomain.