ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2y08B2 - ECOD Domain | ECOD

ECOD/Domains/e2y08B2

e2y08B2

UID: 001699299

PDB

Range: B:219-500
PDB: 2Y08 chain B(all domains)
UniProt: D3Y1I2 (all domains)

Molecule: TAML

3D Structure

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Related Domains

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Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-beta plaits(304)

HH-groupFAD-linked oxidases, C-terminal domain(304.6)

TT-groupFAD-linked oxidases, C-terminal domain(304.6.1)

FFamilyBBE(304.6.1.3)

Ligands

in contact, ≤ 4 Å

Flavin adenine dinucleotideFAD
drugDrugBank DB03147
Magnesium ionMG
metalwithin 5 Å only

+ 1 additive (Glycerin)

Pfam Families

Berberine and berberine like

ClanCL0277FAD-oxidase_C

External Links

ECOD PDB View: 2Y08 RCSB PDB: 2Y08 PDBe: 2Y08 UniProt: D3Y1I2

Downloads

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GlycerinGOL
DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.